MmuEX1003477 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75832177-75841386:+
Coord C1 exon
chr2:75832177-75832511
Coord A exon
chr2:75833093-75833337
Coord C2 exon
chr2:75841286-75841386
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTAAGACTTTGGTATTCCAGCTA
3' ss Score
3.34
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
AGTCGCCGCGGTGACTGCCGGGATGCGCCGCAGCGAATGGTCGCGCGGGGCGCCGCTCTGAGTGACCTTTCACCCGAGCCCAGCGGCCTCGGGCGGCGGCACAAGGCGGAAGCCATGGCGGAGGCGGCGGCGGGCGAGGCGGGCGCGAGCGAGCGGGACCCAGACGCGGGCCGCGCGCGCCGGCGGCTGCGGGTTCTGTCGGGCCATCTGCTGGGCCGGCCCCAGGAGGCTCCGAGTACCAATGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCGGGGCGTCGCCCGCCGCTACTCCTGCCGCACCAGAGTCGGGCACCATCCCCAAGAAGCG
Seq A exon
CTACTGATCCTTTAAGAAGCTAAAAGACAAGAGTCTGAATGAGGAATGTTTGTAAAACCTTAAGACCATTGGAGGAGAATCTCTGTCTCTGATGAAAGCTGTCGAGAGATGGTGTTTTCTGAGATGATCAGTTTGGAAAAACTTGGAGAATGAAAAAAAAAAAAGATTTTGCTAACTCGAATGTGTACTTTCAAAGTGCTGGAGATGGTGCTATTTCCATTACTTCTACGTTCCTAAGGTATTAG
Seq C2 exon
CTGTGATTTGGAGCTGTAGATACCATCATGTCATTCCCTGAAAAAACTGCTGTGTGAGTACATGTGATATATTGTTCTTGTAGCGTGCTTGAAGTTAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'0-1,'0-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=1.000 C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000047232fB5565
Main Skipping Isoform:
ENSMUST00000047232fB352
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTCTGAGTGACCTTTC
R:
GGTATCTACAGCTCCAAATCACA
Band lengths:
308-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types