RnoEX0007967 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62648447-62654519:+
Coord C1 exon
chr3:62648447-62648664
Coord A exon
chr3:62649252-62649494
Coord C2 exon
chr3:62654419-62654519
Length
243 bp
Sequences
Splice sites
3' ss Seq
TTAAGACTTTGGTATTCCAGCTA
3' ss Score
3.34
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
ATGGCGGAGGCGGCGGGAGAGGCGGGCGCGAGCGAGCGGGACCCAGACGCGGTCCGCGCGCGTCGGCGGCTGCGGGTTCTGTCGGGCCATCTGCTGGGCCGGCCCCAGGAGGCTCCAAGTACCAATGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCGGGGCGTCGCCCGCTGCTTCTCCCGCCGCGCCGGAGTCGGGCACCATCCCCAAGAAGCG
Seq A exon
CTACTGATCCCGTAAGAAGCTAAAAGACAGGAGTCTGAACGAAGAATGTTTGTAAAATCTTAAGACCATTGGAGGAGAATCTCTTATGTCTGATGGAAGCTGTGGAGAAATGGTGTTTTCTGAGATTATCAGTTTGGAAAAACTTGGAGAATGAAAAAAAAAGATTTTGCTTACTTGAATGTGTACTTTCAAAGTGCTGGAGATGGGGCTAAATCCATTATTTTTAAGATTCTAAGCTATTAG
Seq C2 exon
GATAAAGTCTTTTCCAGTGTCTGAGTCCAGAAGCAGCTGAGTACAACAAGACACACCGGAAATAGAAATGTTGGTTGGAGAAGTTGTTCAGCAGTTAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000002111fB813
Main Skipping Isoform:
ENSRNOT00000002111fB815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCTGTCGGGCCATCT
R:
CCTAACTGCTGAACAACTTCTCCA
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]