GgaEX1007040 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2712970-2714829:-
Coord C1 exon
chr21:2714608-2714829
Coord A exon
chr21:2713676-2713870
Coord C2 exon
chr21:2712970-2713170
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTCACCCCTGCAGACC
3' ss Score
10.69
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
Seq A exon
ACCGCTGTGGCAAGTGCCAGTTTGGGGCCATCTGCGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCTGTCTGTGGCACAGATGGCAACACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTTTGGTGGCTGCCCAAGGCGACTGCA
Seq C2 exon
AGTCCTGCGGCAGCACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTGCGTGTGTCCCCGCTGTGAGCAGCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAGCTCCGAGCAGCCTCCTGCCAACAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=54.7)
A:
PF0005016=Kazal_1=WD(100=81.8)
C2:
PF0764810=Kazal_2=WD(100=66.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGTCCTCAAGAGAGAGA
R:
CTCACACGGCCCCATCTTG
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]