GgaEX1007040 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2728248-2730107:-
Coord C1 exon
chr21:2729886-2730107
Coord A exon
chr21:2728954-2729148
Coord C2 exon
chr21:2728248-2728448
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTCACCCCTGCAGACC
3' ss Score
10.69
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
Seq A exon
ACCGCTGTGGCAAGTGCCAGTTTGGGGCCATCTGCGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCTGTCTGTGGCACAGATGGCAACACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTTTGGTGGCTGCCCAAGGCGACTGCA
Seq C2 exon
AGTCCTGCGGCAGCACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTGCGTGTGTCCCCGCTGTGAGCAGCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAGCTCCGAGCAGCCTCCTGCCAACAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'26-25,'26-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=54.7)
A:
PF0005016=Kazal_1=WD(100=81.8)
C2:
PF0764810=Kazal_2=WD(100=66.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGTCCTCAAGAGAGAGA
R:
CTCACACGGCCCCATCTTG
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]