Special

GgaEX1007762 @ galGal3

Exon Skipping

Gene
ENSGALG00000016083 | Q70UN6_CHICK
Description
NA
Coordinates
chr2:136962014-137009558:-
Coord C1 exon
chr2:137009457-137009558
Coord A exon
chr2:136989782-136989948
Coord C2 exon
chr2:136962014-136962144
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTCTACCAACTTTTCTCTAGGGT
3' ss Score
8.39
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTCTTTTGTAATATGGAAGTCAATGGAGGAGGATGGACAGTTATACAGCACCGAGAAGATGGCAGCCTAGATTTCCAGAAAGGCTGGAAAGAATACAAAATG
Seq A exon
GGTTTTGGTAGCCCATCAGGTGAACACTGGCTGGGAAATGAATTCATCTTTGCAATTACAAGTCAGAGGCAATATTCTCTAAGAATTGAATTAATGGACTGGGAAGGAAACCGGGCTTATTCACAGTATGACAGGTTTCACATAGGAAATGAAAAGCAAAATTACAG
Seq C2 exon
GCTTTATTTAAAAGGTCACAGTGGAACAGCTGGAAAACAGAGTAGCCTGATCCTGCATGGTGCTGAGTTCAGTACGAAAGATGCTGACAATGACAACTGCATGTGTAAATGTGCTCTCATGTTAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0014713=Fibrinogen_C=FE(20.8=100)
A:
PF0014713=Fibrinogen_C=FE(34.6=100)
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATATGGAAGTCAATGGAGGAGG
R:
CTCCTGTTAACATGAGAGCACA
Band lengths:
227-394
Functional annotations
There are 1 annotated functions for this event
PMID: 10706866
Angiopoietin-1 (Ang-1) is required for developing vessels, and its absence leads to defects in vessel remodeling. Ang-1 has been identified as the ligand for the tyrosine kinase receptor Tie-2, which is expressed specifically on endothelial cells and early hematopoietic cells. In studying the role of Tie-2 and Ang-1 in megakaryocytopoiesis, 3 alternatively spliced species of Ang-1 mRNA (Ang-1.3 kb, Ang-0.9 kb, and Ang-0.7 kb) were identified in addition to the full-length Ang-1 (Ang-1.5 kb), in the megakaryocyte cell line CHRF by reverse transcription?polymerase chain reaction (RT-PCR), and then cloned and sequenced. The function of the 1.5-kb (contains exon encoding fibronogen C-terminal domain (HsaEX0004096)), 1.3-kb (lacks aforementioned exon), and 0.9-kb (contains the aforementioned exon) isoforms was examined. Recombinant proteins Ang-1.5 and 0.9 kb bind strongly to the recombinant Tie-2 receptor (Tie-2-Fc), whereas the 1.3-kb isoform does not. The Ang-1.3 kb isoform binds to the 1.5-kb isoform. Ang-1.5 kb, but not the 1.3-kb and 0.9-kb isoforms, induces tyrosine phosphorylation of Tie-2 in human umbilical vein endothelial cells. These data suggest that isoforms 1.3 kb and 0.9 kb could serve as dominant negative molecules for the full-length Ang-1. Of note, the only difference between the 1.5-kb and 1.3-kb isoforms is the presence/absence of the exon encoding the fibronogen C-terminal domain (HsaEX0004096).


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]