RnoEX0009290 @ rn6
Exon Skipping
Gene
ENSRNOG00000005854 | Angpt1
Description
angiopoietin 1 [Source:RGD Symbol;Acc:628896]
Coordinates
chr7:81342280-81437431:-
Coord C1 exon
chr7:81437310-81437431
Coord A exon
chr7:81386433-81386599
Coord C2 exon
chr7:81342280-81342639
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTATTCTTTCCCAGGGT
3' ss Score
9.72
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTACTAAATCAAACATCCCGTCTTGAAATCCAACTGCTGGAGAATTCATTATCAACATACAAGCTAGAGAAACAGCTTCTCCAACAGACAAATGAAATTCTGAAGATTCAGGAAAAAAACAG
Seq A exon
GGTTTTGGGAATCCCTCTGGTGAATATTGGCTTGGGAACGAGTTCATTTTTGCAATAACCAGTCAGAGGCAGTACATGCTGAGGATCGAGCTGATGGACTGGGAAGGGAACCGAGCCTACTCACAGTACGACAGATTCCACATAGGAAACGAGAAGCAGAACTACAG
Seq C2 exon
GTTGGTGGTTTGATGCCTGTGGCCCTTCCAATCTAAACGGAATGTTCTACACTGCGGGGCAAAACCATGGAAAACTGAATGGGATAAAGTGGCACTACTTCAAAGGACCCAGTTACTCCTTACGTTCCACAACCATGATGATCCGGCCCTTGGACTTCTGAAGGCGCTATGCCAGTATTAGAAACCTGAAAAACAATCTGGGGATGTTCCCGAATGAGAAGCTATCTGGAAGCTTCCGAAACAACCAGCATCGTCTCCCTTCCAGCAGCAAGTGGTTACGTGATGTCACCTGTGTTCTTGACCATGGATCTGGAGCCTTCTGGGGTCACAGAGTCTCCACTCGGGTCACTGTGTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005854_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=FE(25.6=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)

Main Skipping Isoform:
ENSRNOT00000007979fB1050

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTCTTGAAATCCAACTGC
R:
GCCGGATCATCATGGTTGTGG
Band lengths:
254-421
Functional annotations
There are 1 annotated functions for this event
PMID: 10706866
Angiopoietin-1 (Ang-1) is required for developing vessels, and its absence leads to defects in vessel remodeling. Ang-1 has been identified as the ligand for the tyrosine kinase receptor Tie-2, which is expressed specifically on endothelial cells and early hematopoietic cells. In studying the role of Tie-2 and Ang-1 in megakaryocytopoiesis, 3 alternatively spliced species of Ang-1 mRNA (Ang-1.3 kb, Ang-0.9 kb, and Ang-0.7 kb) were identified in addition to the full-length Ang-1 (Ang-1.5 kb), in the megakaryocyte cell line CHRF by reverse transcription?polymerase chain reaction (RT-PCR), and then cloned and sequenced. The function of the 1.5-kb (contains exon encoding fibronogen C-terminal domain (HsaEX0004096)), 1.3-kb (lacks aforementioned exon), and 0.9-kb (contains the aforementioned exon) isoforms was examined. Recombinant proteins Ang-1.5 and 0.9 kb bind strongly to the recombinant Tie-2 receptor (Tie-2-Fc), whereas the 1.3-kb isoform does not. The Ang-1.3 kb isoform binds to the 1.5-kb isoform. Ang-1.5 kb, but not the 1.3-kb and 0.9-kb isoforms, induces tyrosine phosphorylation of Tie-2 in human umbilical vein endothelial cells. These data suggest that isoforms 1.3 kb and 0.9 kb could serve as dominant negative molecules for the full-length Ang-1. Of note, the only difference between the 1.5-kb and 1.3-kb isoforms is the presence/absence of the exon encoding the fibronogen C-terminal domain (HsaEX0004096).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]