RnoEX0009288 @ rn6
Exon Skipping
Gene
ENSRNOG00000005854 | Angpt1
Description
angiopoietin 1 [Source:RGD Symbol;Acc:628896]
Coordinates
chr7:81394826-81422384:-
Coord C1 exon
chr7:81422155-81422384
Coord A exon
chr7:81403265-81403392
Coord C2 exon
chr7:81394826-81394927
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCTTAATGTACAGTTT
3' ss Score
8.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTTATTAGAGCATAAAATCCTAGAAATGGAGGGAAAACACAAGGAAGAGCTGGACACCTTGAAGGAGGAGAAAGAAAACCTTCAAGGCTTGGTTACTCGTCAGACATTCATCATCCAAGAATTGGAGAAGCAACTTAGCAGAGCTACCAACAACAACAGTGTTCTGCAGAAGCAACAACTGGAGCTCATGGACACAGTCCATAACCTTGTCAGCCTTTGCACAAAAGAAG
Seq A exon
TTTTGCTAAAGGGAGGAAAAAGAGAAGAAGAGAAACCATTTCGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAGAGTGGAATCTACACTATTTATTTTAATAATATGCCAGAACCCAAAAAG
Seq C2 exon
GTATTTTGCAATATGGATGTGAATGGAGGAGGATGGACAGTAATACAACACCGTGAGGATGGAAGCCTAGATTTCCAGAGGGGCTGGAAGGAGTATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005854_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=PU(96.6=73.1)
A:
PF089195=F_actin_bind=PD(1.7=2.3),PF0014713=Fibrinogen_C=PU(14.0=69.8)
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Skipping Isoform:
ENSRNOT00000007979fB1050
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGACACCTTGAAGGA
R:
TCTAGGCTTCCATCCTCACGG
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]