GgaEX6022091 @ galGal3
Exon Skipping
Gene
ENSGALG00000016083 | Q70UN6_CHICK
Description
NA
Coordinates
chr2:137009457-137031504:-
Coord C1 exon
chr2:137031272-137031504
Coord A exon
chr2:137014458-137014585
Coord C2 exon
chr2:137009457-137009558
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTCTGCTTTGCAGTTT
3' ss Score
9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTTACTTGAGCACAAAATTTTAGAAATGGAAGAAAGACATAAAGAAGAGATGGACACTTTGAAAGAGGAAAAAGAGAATCTACAGAGTTTGGTCACTCGGCAAAGCTACATAATCCAGGAACTAGAGAAGCAATTAAACAAGGCAACAACTAATAACAGTGTCCTGCAGAAGCAGCAGCTTGAATTGATGGATACAGTTCATACTCTAATTACCCTCTGTTCTAAGGAAGGAG
Seq A exon
TTTTACTTAAGAATGCGAAGAAGGAGGAAGAAAAGCCCTTCAGAGACTGTGCAGATGTATACCAATCTGGTTTTAACAAAAGCGGCGTCTACACTATTTATATTAACAATGTGTCAGATCCTAAGAAG
Seq C2 exon
GTCTTTTGTAATATGGAAGTCAATGGAGGAGGATGGACAGTTATACAGCACCGAGAAGATGGCAGCCTAGATTTCCAGAAAGGCTGGAAAGAATACAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
C2:
PF0014713=Fibrinogen_C=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGACACTTTGAAAGAGGA
R:
TGCCATCTTCTCGGTGCTGTA
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]