GgaEX6022091 @ galGal4
Exon Skipping
Gene
ENSGALG00000016083 | ANG-1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001186376]
Coordinates
chr2:131001501-131022884:-
Coord C1 exon
chr2:131022652-131022884
Coord A exon
chr2:131006471-131006598
Coord C2 exon
chr2:131001501-131001602
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTCTGCTTTGCAGTTT
3' ss Score
9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTTACTTGAGCACAAAATTTTAGAAATGGAAGAAAGACATAAAGAAGAGATGGACACTTTGAAAGAGGAAAAAGAGAATCTACAGAGTTTGGTCACTCGGCAAAGCTACATAATCCAGGAACTAGAGAAGCAATTAAACAAGGCAACAACTAATAACAGTGTCCTGCAGAAGCAGCAGCTTGAATTGATGGATACAGTTCATACTCTAATTACCCTCTGTTCTAAGGAAGGAG
Seq A exon
TTTTACTTAAGAATGCGAAGAAGGAGGAAGAAAAGCCCTTCAGAGACTGTGCAGATGTATACCAATCTGGTTTTAACAAAAGCGGCGTCTACACTATTTATATTAACAATGTGTCAGATCCTAAGAAG
Seq C2 exon
GTCTTTTGTAATATGGAAGTCAATGGAGGAGGATGGACAGTTATACAGCACCGAGAAGATGGCAGCCTAGATTTCCAGAAAGGCTGGAAAGAATACAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGACACTTTGAAAGAGGA
R:
TGCCATCTTCTCGGTGCTGTA
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]