DreEX6074498 @ danRer10
Exon Skipping
Gene
ENSDARG00000030364 | angpt1
Description
angiopoietin 1 [Source:ZFIN;Acc:ZDB-GENE-010817-1]
Coordinates
chr19:47264759-47279485:-
Coord C1 exon
chr19:47279244-47279485
Coord A exon
chr19:47266269-47266396
Coord C2 exon
chr19:47264759-47264860
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTGTGTTTTCAGTGG
3' ss Score
9.99
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTCTGGAGGAAAAGATGCAGGAGCTGGAGGATCGGCACCGGCAGGAGCTGGAGTCTCTGCGGACGGAGAAATCTGACCTGCAGGCTCTGGTCAGCAGACAGAGTTCAGTGATCCGCGAGCTGGAGAATCAGCTGAGCAGAGCTACCGGAAACAGCACAGCACTTCAGAGACAGCAGCAGGACCTGATGGAGAGCATGCGCAGCCTCCTCAGCCTCTGTGCTAAAGACGCCTCTACAGCAG
Seq A exon
TGGTACCGAACAGCACCAAGCAGGCTGACGAGGAGCGAAAGTTTCGGGATTGTGCTGATCTTTATCAAGCAGGCTTCCAGAAAAACGGAGTTTACACCATCAATATTAGCCCACAAGAGACCAAAAAG
Seq C2 exon
GTGTACTGTGTGATGGAGTCTGCTGGCGGAGGCTGGACGGTGATCCAGAAGCGTGAAGACGGCACTGTGGATTTCCAGAAAACATGGAAAGAATATAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030364-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(13.6=67.4)
C2:
PF0014713=Fibrinogen_C=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGACGGAGAAATCTGAC
R:
CCGTCTTCACGCTTCTGGATC
Band lengths:
246-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]