BtaEX0003395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014051 | ANGPT1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001070265]
Coordinates
chr14:59354932-59385321:+
Coord C1 exon
chr14:59354932-59355161
Coord A exon
chr14:59375365-59375492
Coord C2 exon
chr14:59385220-59385321
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGCAGTTT
3' ss Score
11.02
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTTATTAGAACACAAAATCTTTGAAATGGAGGGAAAGCACAAGGAAGAATTGGACACCTTAAAGGAAGAGAAAGAGAATCTTCAAGGCTTGGTTACTCGTCAGACGTACATAATCCAGGAACTGGAGAAACAGTTGAACAGAGCCACCACCAATAACAGTGTCCTTCAGAAGCAGCAGCTGGAGCTCATGGACACAGTGCACAACCTCGTCAACCTCTGCACTAAAGAAG
Seq A exon
TTTTACTAAAGGGAGGAAAAAAAGAGGAAGAAAAGCCATTTAGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATATTAATAATATGCCAGAACCCAAAAAG
Seq C2 exon
GTATTTTGCAATATGGATCTCAACGGGGGAGGTTGGACTGTAATACAGCATCGTGAAGACGGAAGTCTAGATTTCCAAAGAGGTTGGAAAGAATATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014051-'5-6,'5-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=PU(96.1=62.8)
A:
PF089195=F_actin_bind=PD(2.0=2.3),PF0014713=Fibrinogen_C=PU(14.0=69.8)
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGAAAGCACAAGGAAG
R:
ATTACAGTCCAACCTCCCCCG
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development