RnoALTD0002665-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005854 | Angpt1
Description
angiopoietin 1 [Source:RGD Symbol;Acc:628896]
Coordinates
chr7:81403265-81422384:-
Coord C1 exon
chr7:81422155-81422384
Coord A exon
NA
Coord C2 exon
chr7:81403265-81403392
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
CTTTCTCTCTTAATGTACAGTTT
3' ss Score
8.29
Exon sequences
Seq C1 exon
TTTATTAGAGCATAAAATCCTAGAAATGGAGGGAAAACACAAGGAAGAGCTGGACACCTTGAAGGAGGAGAAAGAAAACCTTCAAGGCTTGGTTACTCGTCAGACATTCATCATCCAAGAATTGGAGAAGCAACTTAGCAGAGCTACCAACAACAACAGTGTTCTGCAGAAGCAACAACTGGAGCTCATGGACACAGTCCATAACCTTGTCAGCCTTTGCACAAAAGAAG
Seq A exon
NA
Seq C2 exon
TTTTGCTAAAGGGAGGAAAAAGAGAAGAAGAGAAACCATTTCGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAGAGTGGAATCTACACTATTTATTTTAATAATATGCCAGAACCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005854-11-6,12-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=PU(96.6=73.1)
A:
NA
C2:
PF089195=F_actin_bind=PD(1.7=2.3),PF0014713=Fibrinogen_C=PU(14.0=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGCTCATGGACACAGT
R:
TCTGCACAGTCTCGAAATGGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]