HsaALTD0000305-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000154188 | ANGPT1
Description
angiopoietin 1 [Source:HGNC Symbol;Acc:HGNC:484]
Coordinates
chr8:107303240-107321989:-
Coord C1 exon
chr8:107321899-107321989
Coord A exon
NA
Coord C2 exon
chr8:107303240-107303367
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
CTTTTTTTTTTTTTTTGCAGTTT
3' ss Score
10.92
Exon sequences
Seq C1 exon
AGAGCTACCACCAACAACAGTGTCCTTCAGAAGCAGCAACTGGAGCTGATGGACACAGTCCACAACCTTGTCAATCTTTGCACTAAAGAAG
Seq A exon
NA
Seq C2 exon
TTTTACTAAAGGGAGGAAAAAGAGAGGAAGAGAAACCATTTAGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATATTAATAATATGCCAGAACCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154188-10-13,11-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAAGCAGCAACTGGAGC
R:
TCTCTTCCTCTCTTTTTCCTCCCT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development