HsaALTD0000305-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000154188 | ANGPT1
Description
angiopoietin 1 [Source:HGNC Symbol;Acc:484]
Coordinates
chr8:108315468-108334217:-
Coord C1 exon
chr8:108334127-108334217
Coord A exon
NA
Coord C2 exon
chr8:108315468-108315595
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
CTTTTTTTTTTTTTTTGCAGTTT
3' ss Score
10.92
Exon sequences
Seq C1 exon
AGAGCTACCACCAACAACAGTGTCCTTCAGAAGCAGCAACTGGAGCTGATGGACACAGTCCACAACCTTGTCAATCTTTGCACTAAAGAAG
Seq A exon
NA
Seq C2 exon
TTTTACTAAAGGGAGGAAAAAGAGAGGAAGAGAAACCATTTAGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATATTAATAATATGCCAGAACCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154188-8-9,9-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=PU(96.2=72.5)
A:
NA
C2:
PF089195=F_actin_bind=PD(1.9=2.3),PF0014713=Fibrinogen_C=PU(14.0=69.8)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAAGCAGCAACTGGAGC
R:
TCTCTTCCTCTCTTTTTCCTCCCT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)