GgaEX1010033 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4948713-4958104:+
Coord C1 exon
chr27:4948713-4948820
Coord A exon
chr27:4951241-4951358
Coord C2 exon
chr27:4956798-4958104
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTTCACTTTGCAGTTT
3' ss Score
9.81
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
Seq A exon
TTTGACTTTGCTGACACTGTGGTGTACCAGGCCATCCACACTATTGAGTACTGCCTGGGGTGCATCTCCAACACTGCGTCCTACTTGAGGCTCTGGGCTCTCAGCTTAGCCCATGCAC
Seq C2 exon
GATCGAGTTCCAGAACAAGTTCTACACGGGAACGGGCTTCAAGTTCCTGCCGTTCTCCTTTGACCCCATCCGCGAGGGGAAGTTTGACGATTAGCCTCCCCTGTGCTTTGTGTCCCGGCTGTGTCCCCGTAGTGAATGTAACTTATTGCAGCAGTCTGAGTGTTACCGTGAAGTCTGGGAGCCGCGAGCTTTGACACCCCCTGGTTACGGAGCGATGCGCGATGAAAGAAACTTCTTCCTTAAGTTGCCGCTGCCGCGGGTCGCTGCGCTGTGGCTGTGCTGCCGTGCTGTGAATTCCCTGCCAGCTCCGCGGGGTGCCGTGGGAATAGCGCAGCTGCGGCGGAGCGGGCGTTGGAGCACGTGGAGCGGAGGGCGCGGTGCCTCCAACCCGCACGAAGCTTCCGGCTCGGGAAAGAGGAGGCGGAGGGTTTGGGGTGCGGTTCCTCCGCGTCTTCCCGAAGGAGGGCAGCGGAGCCGCACGGAGCGCTTCTCCCCGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256_MULTIEX2-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
ENSGALT00000005154fB466
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAACTTCGGTGGGATCC
R:
CATTCACTACGGGGACACAGC
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]