DreEX0015948 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7566690-7582189:-
Coord C1 exon
chr24:7582082-7582189
Coord A exon
chr24:7574842-7574959
Coord C2 exon
chr24:7566690-7567077
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTTTTTTCTGCAGTTT
3' ss Score
11.27
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGCACACAGAAGTTCGGTGGCGTCCGGGTCGGAAATGGGCCTACGGAGGACGAGGCAGAGATCATTGACCATGACCAGCTCTCACAACACTCAGAGGAAGGTGATGAG
Seq A exon
TTTAACTTTGGAGACATGGCTGTTCATCAGGCCATTCACACTATAGAGTATTGCCTGGGCTGCATCTCCAACACGGCCTCATACCTGCGACTCTGGGCCCTTAGTTTGGCTCACGCTC
Seq C2 exon
GGTGGAGTTCCAGAACAAATTCTACACAGGACAGGGCTTCAAGTTTGTCCCGTTTTCCTTCGAGAGCATCCTAGAGGGTCGATTTGACGAATGAGAGCTACTAACCATCTGAAATCTGACCAATTCCCTTTCCTGCATGGATCCCATCTCGCTCTGTCCTCTGCAGAAGCAGTGCTGTCTGGTGAAGTGTTTGTAAAATGTGACCCCTGACCTCTAAATGCACCTTTTTCCAGAGTGCTTATTTGAGATATGTTGTGTTCTGTGAGCCTTTTTTCTAGATTTATGGCCCCACTTGACGTAACAGTCCCTCAAAGCAGCGTATTAACTATAATTGATGTTACATAATGTCAGATGGGTGAAAATCAAGCAGTGTGTAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACGAGGCAGAGATCAT
R:
CTTCACCAGACAGCACTGCTT
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]