GgaEX6027562 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4604377-4607663:+
Coord C1 exon
chr27:4604377-4604484
Coord A exon
chr27:4606905-4607022
Coord C2 exon
chr27:4607481-4607663
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTTCACTTTGCAGTTT
3' ss Score
9.81
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
Seq A exon
TTTGACTTTGCTGACACTGTGGTGTACCAGGCCATCCACACTATTGAGTACTGCCTGGGGTGCATCTCCAACACTGCGTCCTACTTGAGGCTCTGGGCTCTCAGCTTAGCCCATGCAC
Seq C2 exon
AGCTCTCGGAGGTGCTCTGGACCATGGTGATCCACACTGGGCTCAGCGTGAGGAGTCTGGCTGGAGGCTTTGGCCTTGTCTTCATTTTTGCTGCTTTTGCTACCCTGACGGTAGCGATTCTCCTGGTCATGGAGGGCCTGTCTGCTTTCCTCCATGCTCTTCGCTTGCACTGGTGAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'23-35,'23-34,28-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
PF0149614=V_ATPase_I=FE(5.0=100)
C2:
PF0149614=V_ATPase_I=PD(7.3=96.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGACCAACAGAGGAGG
R:
GTAACTCACCAGTGCAAGCGA
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]