RnoEX0013253 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88952670-88960323:+
Coord C1 exon
chr10:88952670-88952777
Coord A exon
chr10:88959731-88959848
Coord C2 exon
chr10:88960152-88960323
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTCCTCCCATGCCAGTTT
3' ss Score
6.76
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAAGAG
Seq A exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGCTGCATCTCCAACACTGCGTCCTACCTGCGGCTCTGGGCCCTCAGCCTGGCCCATGCAC
Seq C2 exon
AGCTCTCTGAAGTACTCTGGACCATGGTGATCCACATCGGCCTGCATGTCCGGAGTCTGGCAGGGGGACTGGGGCTGTTTTTCATCTTCGCTGCCTTTGCCACCCTGACCGTGGCCATCCTGCTGATCATGGAAGGCCTCTCAGCCTTCCTCCACGCACTGCGATTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'40-47,'40-46,48-47
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGGTGGGATCAGGGTG
R:
GCTGAGAGGCCTTCCATGATC
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]