GgaEX1013957 @ galGal3
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:473795-476838:+
Coord C1 exon
chr2:473795-473880
Coord A exon
chr2:476080-476134
Coord C2 exon
chr2:476803-476838
Length
55 bp
Sequences
Splice sites
3' ss Seq
AAATGCTGTCTGTTCTGCAGGTT
3' ss Score
8.86
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
TCAGCATGAAAATACTGAACAAGATCTGGGAAACAAGAGTGCAAATGGTTTGCAAAGAACAGTGTCCTCAGAATCAACAGACTCAG
Seq A exon
GTTGTGCTTTGGATCTGCCTGGCACTCCGTCCCCCAGCGACATCAGAGAGGAAAC
Seq C2 exon
ATTTGAGAAGGCAATTCTTGCATCGAGCAGACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(4.4=57.9)
C2:
PF066178=M-inducer_phosp=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]