GgaEX1013957 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:567591-570634:+
Coord C1 exon
chr2:567591-567676
Coord A exon
chr2:569876-569930
Coord C2 exon
chr2:570599-570634
Length
55 bp
Sequences
Splice sites
3' ss Seq
AAATGCTGTCTGTTCTGCAGGTT
3' ss Score
8.86
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
TCAGCATGAAAATACTGAACAAGATCTGGGAAACAAGAGTGCAAATGGTTTGCAAAGAACAGTGTCCTCAGAATCAACAGACTCAG
Seq A exon
GTTGTGCTTTGGATCTGCCTGGCACTCCGTCCCCCAGCGACATCAGAGAGGAAAC
Seq C2 exon
ATTTGAGAAGGCAATTCTTGCATCGAGCAGACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(4.5=57.9)
C2:
PF066178=M-inducer_phosp=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]