RnoEX0018911 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123732715-123735685:+
Coord C1 exon
chr3:123732715-123732836
Coord A exon
chr3:123733465-123733516
Coord C2 exon
chr3:123735644-123735685
Length
52 bp
Sequences
Splice sites
3' ss Seq
AAGGTGCTCTGTCCCACCAGGTC
3' ss Score
9.49
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CGAGACCCCAAAAACTCAAGTAGGAAGCCTGTCGTTCCAGAACAGGCTGACAGACCTGTCCCTGTCCAGACGTACCTCTGAGTGCTCCCTGTCATCTGAGTCCTCAGAATCTTCTGATGCAG
Seq A exon
GTCTCTGCATGGACTCCCCTAGCCCTATGGACCCACAGACAGCAGAGCGCAC
Seq C2 exon
GTTTGAACAGGCCATTCAGGCAGCCAGTCGGGTCATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=1.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(5.2=77.8)
C2:
PF066178=M-inducer_phosp=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGGAAGCCTGTCGTTCCA
R:
TTTGAATGACCCGACTGGCTG
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]