DreEX0020125 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14795048-14797416:-
Coord C1 exon
chr13:14797334-14797416
Coord A exon
chr13:14796169-14796220
Coord C2 exon
chr13:14795048-14795089
Length
52 bp
Sequences
Splice sites
3' ss Seq
ACCTCTATGTTTATCCACAGGTC
3' ss Score
12
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TCAATGTGAAACTCCAAAGCGGAAGAAAAATTTGCCCCTCCTGAAGATTCCTTCCTTCGCCTCTGATGCCTCTTCTGATGCAG
Seq A exon
GTCTTGGACTAGAGTGTCCCAGTCCTTTAGATTCTCTGGATGCTGAGCAGAA
Seq C2 exon
GTTTGAGAAGGCCATGCAGGACGCCACACGAGCCGTTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.481 C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(15.4=77.8)
C2:
PF066178=M-inducer_phosp=FE(12.1=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGTGAAACTCCAAAGCGGA
R:
TCATTAACGGCTCGTGTGGC
Band lengths:
125-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]