BtaEX0008049 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51859769-51863562:-
Coord C1 exon
chr13:51863144-51863562
Coord A exon
chr13:51861541-51861592
Coord C2 exon
chr13:51859769-51859810
Length
52 bp
Sequences
Splice sites
3' ss Seq
CAAGGCACTCTGTCTCTCAGGTC
3' ss Score
6.65
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGGCAGCCTCTGCTAGAGGCTTCCTGGGCTGGTAGCCTGTCCCCGTGTCCCTCCTCCCTTCCCCACCCTCCCCACTTCCCTCTCCTCTCTCGCTCCTGCCCCTTTGCTCTTCCTCCCTCCCTTCCCTTCCACCCCGGGCCGGCTCCCTACCTCGTCCAGGCCAGCTGTGCCCGGCGTCTGTTGGTCGCCCTACGCCAGGCCCGCCCGCCCCACCGCGATGGAGCTGCCCCAGCCGGAGTCCGTGGCAGGCTCGGCTCTCAGTCCGGCCGGCATGCGCGGTGGCGCCCAGCGTCCTGGCCACCTCCCGGGCCTCGGGCTGGGGGCTCATGGCCTCCTGGGGTCCCCGGAGCGCGCGGCCGCTTCCTCTCCGGTCACCACCCTCACCCAGACTATGCACCACCTCGCTGGGCTCGGCAG
Seq A exon
GTCTGTGCATGGACTCTCCCAGCCCTATGGACCCCAACATGGCAGAGCAGAC
Seq C2 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGAGTTATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(33.3=77.8)
C2:
PF066178=M-inducer_phosp=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGGCCTCCTGGGGTC
R:
TTGAATAACTCGGCTGGCTGC
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development