BtaINT0034921 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51859769-51861592:-
Coord C1 exon
chr13:51861541-51861592
Coord A exon
chr13:51859811-51861540
Coord C2 exon
chr13:51859769-51859810
Length
1730 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GGGACCCTTCTCTGTCCTAGGTT
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTCTGTGCATGGACTCTCCCAGCCCTATGGACCCCAACATGGCAGAGCAGAC
Seq A exon
GTGAGTAGAGAAGAGGGACCACACGGTCAAGGAGGGGAACCTGCCCTTGAGAATCTTAGTTCCACCCTAAACTCACTAGGGGAGCTTGGGAGAGCAAACAGACCTCCCTAAACCCTTGTATAGGGGCACTAATTGACCTTTCCATGTCCCGGCATTCTGCTTGTCTCAGGGAAGGGTCTACTATCGTGGGAGCAGCTTAGAATGGGTTCAGGACAGTAGCCACAGGGAGCCTCTTGTGGGAATACAGGACTGTATGTGCCCTTTCTGCCTATGCACGTATTTTTCTTTCCTGTGAATTATCAAAATTTTAAAATATGGTCCAACTAATTCAAAGTTTTTAATTTACTCTAGGCCAAACAAAACAGTTGCTGCAAGCTGGTTTGGCCCTTGGCCCTCCTATCAGTCACCACTGGTTTCAGTGACATTTCATCCGCTGGCCAACCCTTGGACCAGGCCCTTTGTGAAGGAGAGTGGAGAAGTTGAGGGGCTCTGCTCAACACAGTTCTCTGCTTCTTGGTTGTGGGGCAGGAGTAGTACCTTCCAGAGCACAGCTGTTCCCATCCAGCTGTTCAGGCCCCAGAAGGGAGAGCAGGCGTTACTGGGAACAACGGGCAAACCCGGCCTGGGCTGAGCGACTGTGGATTTGGGTTTAGGGCGGTGGCTGTCTTTCCTCCCACTGCCTTTGATCAGACTGGGCTGGGCTGCAGGTTTGTTCATAAACAGGAAATGGGGAGAGCATTGGGTGGTGGTGTGGGGACTGCAGGTTGGGTTTTGATGATAACACAGAGCTGAACCTGCTTTACCCCTAGGGCCCAGGTGCAGACTGAAAACCAAGCCAATTAAATTGGTCATCCTGGTGCCAGGTTGGCTGCATACAGCCACCCTGCCCCACCTGGGTGAGGGGTGGGGGGGCTATCCTCCTGACACTTTAGCCCTCAGTTTCCCACCACCAACACTGCACCTGCCTTAACAGTTACACAGAAAGAGGTGTGTGTGTGTGTGTACACAGAGACACACAAAAGCCCTGCCTGGCAGGTGGTCTCTGGTAACATAGCTAGGCTCAGAAGGAACATCTGTTGGAATTCTTTGCCTGCTGGTCTCTTCTAAGGCAGGAGGAGGGGTTGGAACAGAGGCTGGGTTCTAAAATTCCACAGGAGGGAGGAGAGGTTATGACCTTGGACATTTGTCACTAGGGGGTCTGACATGGCAGACCGGGGCTGATCCAGGGGCACACTGAACCAGTCCCCTGTCCTGGAGGAGCCAGGACTATCCCACACAAGGGGAGGGAAGCCCTGCCTTGCTGGTATCCAGGCCCTGCAGACACCCACATGTTCAGGACAAGGCCTGTCATGGGATGGATGGATGCCTTTCTTGGCAGCCATATGGCCCTGCTGAGGTGATTTGCATACAGGTGGAAGGCCTGTGGGCAGGCTGGTGAGACCGTTGCCTTGGTAACTCCTCAGCTACCCCAAGACCTACCCCAGCTGTCTCTGTCACTGCCATTCTTCAGGCTTCTTCCATTCAGGGCAGCTTTTAAAATCCCAGGCTGCCTCTTATCTCCCTCTTCCCCTATACCTGGGCCCATGATAGGTGCTGCATTCTTCCTACCTCCTCTTTCCCCTGGCCTGAGCTCTGGCTCCCCTGGGCCTTGTGGACTGAGGACCCAAGGCTGGGGATAGGCAATGGGCTGTGAGGAGACCTAGGTTGAATGGGACCCTTCTCTGTCCTAG
Seq C2 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGAGTTATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development