RnoINT0032527 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123733465-123735685:+
Coord C1 exon
chr3:123733465-123733516
Coord A exon
chr3:123733517-123735643
Coord C2 exon
chr3:123735644-123735685
Length
2127 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCATTTCTGCTCTCTCCTAGGTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTCTCTGCATGGACTCCCCTAGCCCTATGGACCCACAGACAGCAGAGCGCAC
Seq A exon
GTGAGTAGAGGGGGAGGAGTCCTTCCACTGAGGACTTGGCACCTGCCCTTGAGGACTGATCTTTCTTTAATGTGTTTTTAATTATGTGTTATATGGTTTTCTACATGGGGATATGTGCGTGTAAGCGTGTTGTCCTATAGCGGTCAGAGAGGGCCTTGGAACACTTAGAGCTAGAATTCCAGGCTGTCGTGAGTTGCCATATGTGGGTGCTGGGTACTGAACTCAGGTCCTCTGCAAGAATAACAAATACTCTTCGTCACTGAGCCATCTCTCCAGCCCCCAGTATCCTGCTTAAGAAAGGGAAACCAAATAATAGGCAGGTTCCTCAGGATCCCCATTGCGAGGGGTTGGTTTCTTCCTAAGTCTTAAGAATTGGCTCCTTATTCAGAGAAGGCCTGATACCATAGAAACCAGAGGAACGTGGGCTCAGGACCACAGGTCACAGGAACAATGGCCTCTGGGAAAGTATACTCCAATATTAGTCCAGCTAACATTGTCATTCAGAAAAACAATGCCCCTCATGTTCCCACTTTTCTTTTTCTCCTGTATACATTTTTTTGTACATGTAACATTTTTTTCAAACTTAAAAATATGGTCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTCGCCTAGCAAGCGCAAGGCCCTGAGTTCGGTCCCCAGCTCCAAAAAAAAAAGAAAAAAAATATGGTCCTGTTGGGTGTGGTGGCCCAACACTCTGGAAGATCAGACAGAAAGATAGGCAGTTCAAGGCCAACCGAGGCCAAACAAAAATTGCATTTGCAGACTGGCCTGGCTCATCAGCAGCTCCCAGTTTTCCCTGACACTTGGTGCTTTTGGCTGACCCTTGACCAGACCCTTTGCAACAGGGAATGGAGAGGAGAAAGCTGGTCTTTGCTGTGAGCAGACTCCTCCTCCTTGGCTGTGGCACAATAGAGCCTTGTAGAGCACACCTGTTCCCATCCAGCTGTGGAGTAGCTGTCAGTCATTAGGAGGAACAGCTGGGCATTGCCAGTCACAGCTTTTGGTTTAGGGCGGGGGTTACTATTTCCCCCTGATGTCTTTGATCAGACTGTGCTGGTCTCAAGGTTTATTCACAAACAGGAAATCGAGAGTTGGGTGGGGATGGGAGGAGTGTACGTTGTTTTTTAGCGACAACACAGATAGATCCCTCACCCCTGAGGCCCAGCTACAAATGATGCCAGGTTGATTGCACACAGGCCTCTCTGAGGGTCACTTGGACACTAAGTGCCTCTCCAGTTAGTCTGCACTTACTTTTGACTATTTACAGCTTCTCAGAAAGAAGCTGGGGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAGCTCCACATGACAGGTGCTCCAGCAACATTGGAAGGCAGGGCCTGTATGTAGAAGTTGACGCTTCAGCCTCAAATGGAGCATCTGTTGGAATTCCTTGCTGGCTGGCCTCTTCTAAGACAGAAGGAGGGGGTGGAACAGAGGTTGGGTCTTAGAAAATTCCATAGGAGGGAGGAGAGAATGTAACCCTGTATACTTGTCACTAAAGGGTCTGCTGGGCTGATCCAGAAAAATCACCAAAGCAGCCCCTGTCCAGGGAGCCAGGCCAGTGGCTAGCAGAAAGGGAAACCCAGCATTGCTGGCATCCACCCCCAGGGTCACCTATATTACAGGGTACCTTCAGCCTGTTGTCTGGGATGGATCAATGCCTTTCATGGTGGCCATATGGCCCCAGTAATGTAATTTGCATACAGGTGGAAGGCCTGTGCTTGTGTGTGCAGGCTGGCGAGACTGTTGCCTTGGTGATGTCTTAATGACCCTGTGACCTGCCCCAGCTGTCTCCATCACTGCCTTTCTCTGGGCCTGCTTTTCATTCACAGCAGCCTTTACAATTCCAGGCTGCCTCAAACCCTTCCTCCTTGGTCCCTGGTCCCACCAACAGTGCACTATTTTCTACTCTCCCCTCCTAGAGCCTGACCACAGGCCCTCATCCTTGCCCTTGTTGCTGGCCCTATGGGCATGAGCCAGGCTTGGGCCTGAGGCTTGGGGTAGATGTTGGGCTACTGGGAAAATGGGTCATTTCTGCTCTCTCCTAG
Seq C2 exon
GTTTGAACAGGCCATTCAGGCAGCCAGTCGGGTCATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(5.2=77.8)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]