DreINT0043709 @ danRer10
Intron Retention
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14795048-14796220:-
Coord C1 exon
chr13:14796169-14796220
Coord A exon
chr13:14795090-14796168
Coord C2 exon
chr13:14795048-14795089
Length
1079 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GTTTTTCTTTATCTACACAGGTT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTCTTGGACTAGAGTGTCCCAGTCCTTTAGATTCTCTGGATGCTGAGCAGAA
Seq A exon
GTGAGTATGACTTTTCTGCCTCATTTCTGACATGTGACGTAAAGCTTGGTTTGAGGATTATATGTCTAATCTAGTCCCTGCCGTTAGGTGACCTATAGACGTGTTTAGCGTGTCTGTTTTTACAGATTAACCGAACATATGCTAGCATAAATCACAGATCACTAGATATCTTAACCATATCCTGTTATTACAGGGATTATTAAAGCGCAATTTAAACTTGTGATCATTTAGTCAGCCATATGTTGTTCCGACTGAAGTAGTTTAAATGTTTTGAGCCCCAAAAATATTTTGATTTGTTTAATCTCTGGTATGTAACCGTATTAACAGTCCAGCATGCCTTAAAGGGATAGTTCATTCAGAACTTAAAAGCATCTTATTTACTCACATTACATTTATTCCAAGCCTGTTTCCAAACATTTTTTTTTAAGCTCCGATATGCTTCATGCACACAATATTTGCTAAACTCATCCCAGCTCTCCAATAATCAACACTTAGTGGGATGGTTCTCCTTTCCAAGCTATTTGGTGTCAGTGGGAATCCATTTATCTAAAGCCAGACCTACAGCTGTTTGGGTTCCTCTCGTGTTTGTGTCTGTCTTTCTGTGTGTGTGTGTGTTGCGCATTGCTAAAGGGGGGCTGGGTGACTAGTGGCACGCTTTTCATGCCCTGTGAGCGCAAACGTCCGAATAGATCTGTAGTACTTGTGTGTGAGGTAGTCAGGGTTACTCGGGGACCAACCCCCCGAACATAATTCCCTACTTTTCCTATGCTATTAAAGAGACACGCTCCTTACCTCCTCCCCCTCCTAACCACCATAGCTGTTCCCCACGTCAAACAAAAGAGGCTTGAGAGGGGGTTTGCGTTGTGTGGGCATATGGTAAATTAGAAAATGCCCCCCTTTTTCCTTCCCCGGGGCTGTTTTACATACAGGTGGGCATTGCGGTGTATTTGTTAAATGAAGAGTGGCCTGGACTGAAAGATAAATGAGCTGGATTGTCGTCTGGACTTGTGTTTAGTTGACGTAGGAGGGGACTTTGAATACACTGGGAACTGTTGAATAGTTTTTCTTTATCTACACAG
Seq C2 exon
GTTTGAGAAGGCCATGCAGGACGCCACACGAGCCGTTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792:ENSDART00000020576:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(15.4=77.8)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]