HsaINT0031552 @ hg19
Intron Retention
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3779059-3780976:+
Coord C1 exon
chr20:3779059-3779110
Coord A exon
chr20:3779111-3780934
Coord C2 exon
chr20:3780935-3780976
Length
1824 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GGGACCCTTCTCTGTCCTAGGTT
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCACATGGCGGAGCAGAC
Seq A exon
GTGAGTAGAGAAGGGAATGTGTACTTCCAAGCATTCAGCACCTGTCTTTAAGAATCCTAGTTCTACCATAAATTCACCCGGGAGGCCTGGGAAAGCAGACAGACCATGGGGTGGCTTCAGGATCCCCATGGCCGGGGGGCTCACTGACTTTCTCAGGCCTTGGCATTCTGCTCCCTGTCTCAGAGAAGGATCTGCTCTCATGGGAGCCAACCGAGTGTGGGCTCAGGGCCAGGGATAGTGGGGACAGTGGCCACTGGGAGAGCAGATACTAGACTACAGCCCATGTCTTGCAGGAATACAAGCCCAGCGTATGTCCCGTTTTTCTTTCTTGCCTATACCCATTTTTTTCTGTGAAATATTACAATTTAAAAATATGATCCAACTAATTCAAAACTTTAACTCACTCTAGGCCAAACAAAACACAGTTGCCTGCAGATTGATTTGGCTCTTGGCCGATCAGCAACCTCTGACTTCGATGACACTTTACCCTCTGGCCAGCCCTGGTCTAGGCCCTTTCTGCAAGGGAATGGAGAGAGAGTTGGTGGGCTCTGGCCTGGACAGACCATCCCCTTGGCTGTGGGCATGGGTGGTGTCTTCCAGAGCACAGCTGTTCCCATCCAGTTGTTAAAGCCCAAGCAGCGGGGCAGCTGCCAGCCATTAGTAGGGACAGCTGGGCATCTCTGGCCTGTGCTGGGGACTGTGGCTTTGGGTTTAGGATAGTGACTTGTCTTACCTCCCATTGCCTTTGATCAGACTGGGTTGGGCTGCAGATTGGTTCACAAACAGGAAATGGGGAGAGGATTGGGTGGGGTTGGGGGACTGCAGGTTGGTTTTGGTGGCAGCACAGAGCAATCTTGCCCTACCCCCAAGGCCCATGTGCAAGCCAATGAAATTGGTCATCCCTGATGCCAGGTTGGCTGGGCACAGCAGCCCCCCGGGGGGGCATCCCCCTCATACTTTATCCCTGAGTGGTTCCCTGCCCTGCACCTGCTCTGACAGTTATACAGAGTTTCTCAGAAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTAGATGCACAAAAGCTCCGCGTGGCAGGTGGTCTCCTGTAACACGGCTGAGGGGGCGGGGCCTCAGAGGGAACATGTGTTGGAATTCCTTGCCTGCTGGCCTCTTCTAAGGCAGGAGGAGGGGGTGGGACAGAGGCTGGTCCTGGAAAATTCCATAGGAGGGAGGAGAGGATGTGAGCCTGCACGTTTGTCACTGGGGGTCTACTGTATCAGACTGGAGCTGACTGGGGGAGCCCTAAAGCAGGCCCCAGTCCTCAGAGGACCGGGAGCCAGGCCAGCTCCTCACAGGGGAGAGGAAGCCTAGCCTTGCTGTTGTCCAGGCCCTGGAGACACCCACATTGCTGGGTGCCCCTGGCCTATCATAGGATGGATGGATGCCTTTCCTGGCAGCCATATGGCCCCGCTGAGGTGATTTGCATACAGGTGGAAGGCCTGGTGCAGGCTGGCGAGACTGTTGCCTTGGTGACGCCTCCCTGACCCTGACCTGCCCCAGCTGTCTCTATCACTGCCATTCTCTGGGCTTTCTTTCATTCAGGGCAGCCTTTAAAATTCCAAGCTGCCTCTTATCTTCCCCCTCCCCAATACCTGGGCCCCCTGATGGTGGGCGTTCTTCCCACCCCACCCCTTCCACTGCCTTGAGCCTTGGCCCTTGTCTTTGCCCTTACTCCCCCCTGGACTGGGGGCCTGGTGCTGGGGTGGGTGATGGGTGCGGAGGGAGCATGGGTTGCATGGGACCCTTCTCTGTCCTAG
Seq C2 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGGATCATTCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-CDC25B:NM_004358:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.433
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)