GgaEX1016347 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10586997-10596865:+
Coord C1 exon
chr6:10586997-10587032
Coord A exon
chr6:10595730-10595756
Coord C2 exon
chr6:10596839-10596865
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTTCTTTTTCAGGGT
3' ss Score
13.14
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GGAGACAAAGGCGCAATGGGGATTCCTGGGCGGCCG
Seq A exon
GGTCATCCTGGACAGAAGGGGGAGATG
Seq C2 exon
GGTGCCGCAGGTCCCAGGGGACTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX2-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=FE(13.3=100)
C2:
PF0139113=Collagen=FE(13.3=100)
Main Skipping Isoform:
ENSGALT00000006816fB6332
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]