GgaEX1016481 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23550441-23551761:+
Coord C1 exon
chr2:23550441-23550494
Coord A exon
chr2:23550848-23550946
Coord C2 exon
chr2:23551708-23551761
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGTACATTTTCTTTTTCTAGGGT
3' ss Score
8.41
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTCTCCCAGGTCAACCTGGAAGCCCAGGTCCTGCTGGCAAAGAAGGTCCTGTT
Seq A exon
GGTTTCCCTGGAGCAGATGGTAGGGTTGGGCCAATCGGTCCAGCTGGTAATAGAGGTGAACCTGGCAACATTGGATTCCCTGGACCAAAAGGTCCCACT
Seq C2 exon
GGTGAGCCTGGCAAACCTGGTGAAAAAGGCAATGTTGGTCTTGCTGGCCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(11.6=44.4)
A:
PF0139113=Collagen=PD(26.5=66.7),PF0139113=Collagen=FE(46.4=100)
C2:
PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(7.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAACCTGGAAGCCCA
R:
GGGCCAGCAAGACCAACATT
Band lengths:
96-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]