GgaEX1016481 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23721519-23723741:+
Coord C1 exon
chr2:23721519-23721572
Coord A exon
chr2:23721926-23722024
Coord C2 exon
chr2:23723688-23723741
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGTACATTTTCTTTTTCTAGGGT
3' ss Score
8.41
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTCTCCCAGGTCAACCTGGAAGCCCAGGTCCTGCTGGCAAAGAAGGTCCTGTT
Seq A exon
GGTTTCCCTGGAGCAGATGGTAGGGTTGGGCCAATCGGTCCAGCTGGTAATAGAGGTGAACCTGGCAACATTGGATTCCCTGGACCAAAAGGTCCCACT
Seq C2 exon
GGCAACCAAGGTGCAAAGGGTGAAACAGGTCCTGCTGGCCCTCCTGGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-16/39=15-19
Average complexity
C3
Mappability confidence:
95%=100=96%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(11.6=44.4)
A:
PF0139113=Collagen=PD(24.7=66.7),PF0139113=Collagen=PU(53.3=97.0)
C2:
PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAACCTGGAAGCCCA
R:
CAGGAGGGCCAGCAGGAC
Band lengths:
92-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]