GgaEX1016484 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23557801-23558577:+
Coord C1 exon
chr2:23557801-23557854
Coord A exon
chr2:23558365-23558418
Coord C2 exon
chr2:23558524-23558577
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGCTGTCTGTTTCAGGGT
3' ss Score
13.29
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
GGTCTTCCTGGTGCTATTGGTGCTCCTGGCCCTGCTGGTGGTGCTGGTGATCGG
Seq A exon
GGTGAAGGAGGTCCTGCTGGTCCCGCTGGTCCTGCTGGTGCCCGTGGTATTCCT
Seq C2 exon
GGTGAACGTGGTGAGCCTGGTCCTGTAGGTCCTAGTGGATTTGCTGGACCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(19.5=100)
A:
PF0139113=Collagen=PD(1.5=5.6),PF0139113=Collagen=FE(19.5=100)
C2:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=PU(9.1=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCTGGTGCTATTGGTG
R:
AGGAGGTCCAGCAAATCCACT
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]