GgaEX1016484 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23728879-23736736:+
Coord C1 exon
chr2:23728879-23728932
Coord A exon
chr2:23729443-23729496
Coord C2 exon
chr2:23736629-23736736
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGCTGTCTGTTTCAGGGT
3' ss Score
13.29
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
GGTCTTCCTGGTGCTATTGGTGCTCCTGGCCCTGCTGGTGGTGCTGGTGATCGG
Seq A exon
GGTGAAGGAGGTCCTGCTGGTCCCGCTGGTCCTGCTGGTGCCCGTGGTATTCCT
Seq C2 exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-26/39=25-39
Average complexity
C3
Mappability confidence:
92%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(19.5=100)
A:
PF0139113=Collagen=PD(1.5=5.6),PF0139113=Collagen=FE(19.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTATTGGTGCTCCTG
R:
TGGCTACCATGAGATCCACGT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]