GgaEX1016560 @ galGal3
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
NA
Coordinates
chr13:14467003-14468156:+
Coord C1 exon
chr13:14467003-14467050
Coord A exon
chr13:14467520-14467597
Coord C2 exon
chr13:14468135-14468156
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGTCCTCGGTTGCAGGGC
3' ss Score
8.52
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAGGGTGAACCCGGTGAGAAGGGAGGAGTCGGCTCCATCGGACCCCGG
Seq A exon
GGCCCCCCTGGCCCAAAAGGGGAACAGGGTGACACAGTGGTCATCGACTACGACGGCCGCATCCTGGATGCACACAAG
Seq C2 exon
TCTGTTTGCATGCTTACCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'0-1,'0-0,1-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.769 C2=0.875
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(51.7=93.8)
A:
PF0139113=Collagen=PD(41.4=46.2)
C2:
PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]