GgaEX1016560 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13594561-13596211:+
Coord C1 exon
chr13:13594561-13594605
Coord A exon
chr13:13595075-13595152
Coord C2 exon
chr13:13596158-13596211
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGTCCTCGGTTGCAGGGC
3' ss Score
8.52
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTGAACCCGGTGAGAAGGGAGGAGTCGGCTCCATCGGACCCCGG
Seq A exon
GGCCCCCCTGGCCCAAAAGGGGAACAGGGTGACACAGTGGTCATCGACTACGACGGCCGCATCCTGGATGCACACAAG
Seq C2 exon
GGCTCTCCAGGTCCCCCAGGGCCGCCGGGCCCGCAGGGCGCTCCAGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.1=100)
A:
PF0139113=Collagen=PD(20.7=46.2),PF0139113=Collagen=PU(5.0=11.5)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]