GgaEX1016605 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:36998891-37010789:+
Coord C1 exon
chr4:36998891-36998917
Coord A exon
chr4:36999083-36999109
Coord C2 exon
chr4:37010718-37010789
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTTCCACTTTGCAGGGA
3' ss Score
9.27
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCCCTCCTGGTCCAAAAGGCGAGAAG
Seq A exon
GGAGATCAAGGTGATCAGGGCCCTCGG
Seq C2 exon
ATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'8-6,'8-4,9-6
Average complexity
C1
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCCTGGTCCAAAAG
R:
AATGAGGCGGCGTTTAATGAG
Band lengths:
96-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]