GgaEX1016680 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:580614-581451:-
Coord C1 exon
chr7:581398-581451
Coord A exon
chr7:581223-581276
Coord C2 exon
chr7:580614-580667
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTAGTTTTGTCTTTGTACAGGGT
3' ss Score
6.96
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGCACCAGGTAAGAATGGAGAAAGAGGCCCTGGTGGACCACCTGGAACTCCT
Seq A exon
GGTCCTGCTGGGAAGAATGGTGATGTTGGCCTCCCCGGTCCTCCTGGACCTGCT
Seq C2 exon
GGTCCTGCTGGGGACAGAGGAGAACCAGGACCATCAGGTTCACCTGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=27.8)
A:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(6.9=27.8)
C2:
PF0139113=Collagen=PD(24.2=83.3),PF0139113=Collagen=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACCAGGTAAGAATGGA
R:
CCTGATGGTCCTGGTTCTCCT
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]