GgaEX1016680 @ galGal4
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
Gallus gallus collagen, type III, alpha 1 (COL3A1), mRNA. [Source:RefSeq mRNA;Acc:NM_205380]
Coordinates
chr7:571200-576852:-
Coord C1 exon
chr7:576799-576852
Coord A exon
chr7:576624-576677
Coord C2 exon
chr7:571200-571253
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTAGTTTTGTCTTTGTACAGGGT
3' ss Score
6.96
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGCACCAGGTAAGAATGGAGAAAGAGGCCCTGGTGGACCACCTGGAACTCCT
Seq A exon
GGTCCTGCTGGGAAGAATGGTGATGTTGGCCTCCCCGGTCCTCCTGGACCTGCT
Seq C2 exon
GGTGCTGCTGGTTTCCCTGGTGCTCGTGGTCTACCCGGTCCCCCTGGTAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552_MULTIEX1-22/44=21-34
Average complexity
C3
Mappability confidence:
93%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACCAGGTAAGAATGGA
R:
GGACCGGGTAGACCACGAG
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]