GgaEX1016683 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:576909-577795:-
Coord C1 exon
chr7:577742-577795
Coord A exon
chr7:577584-577637
Coord C2 exon
chr7:576909-576962
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCATTTTTGTTCCTTACAGGGA
3' ss Score
11.09
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTAACGTAGGTCCCATTGGTCCTCCTGGTCCTGCTGGCCCACCTGGAGATAAG
Seq A exon
GGAGAGACTGGACCAGCTGGTGCCCCAGGTCCTGCAGGTTCCCGTGGTGGTCCG
Seq C2 exon
GGAGAGCGAGGAGAACAAGGTCTTCCTGGGCCTGCTGGCTTCCCTGGAGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(15.5=61.1)
A:
PF0139113=Collagen=PD(11.4=44.4),PF0139113=Collagen=FE(23.9=100)
C2:
PF0139113=Collagen=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACGTAGGTCCCATTGGT
R:
TGGAGCTCCAGGGAAGCC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]