GgaEX1016683 @ galGal4
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
Gallus gallus collagen, type III, alpha 1 (COL3A1), mRNA. [Source:RefSeq mRNA;Acc:NM_205380]
Coordinates
chr7:568737-573196:-
Coord C1 exon
chr7:573143-573196
Coord A exon
chr7:572985-573038
Coord C2 exon
chr7:568737-568844
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCATTTTTGTTCCTTACAGGGA
3' ss Score
11.09
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTAACGTAGGTCCCATTGGTCCTCCTGGTCCTGCTGGCCCACCTGGAGATAAG
Seq A exon
GGAGAGACTGGACCAGCTGGTGCCCCAGGTCCTGCAGGTTCCCGTGGTGGTCCG
Seq C2 exon
GGTGAAGATGGTAAACCAGGTGTCAATGGTGTCCCAGGAGAACGTGGTGCTCCTGGTCCACAAGGTCCCATGGGTCAGAGAGGCTTACCTGGAGAGCCTGGCAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552_MULTIEX1-30/44=29-38
Average complexity
C2
Mappability confidence:
87%=95=95%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGGTCCCATTGGTCCTC
R:
TAAGCCTCTCTGACCCATGGG
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]