GgaEX1018549 @ galGal4
Exon Skipping
Gene
ENSGALG00000027908 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:37412243-37420256:-
Coord C1 exon
chr4:37419853-37420256
Coord A exon
chr4:37415202-37415834
Coord C2 exon
chr4:37412243-37412404
Length
633 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTTTCCTTTCCAGGTG
3' ss Score
14.18
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTTCTGCGAGCCCCCACCGCCACCGAGCTGCTGCTGGTGTCCGTGTGCTGGCTGGGCTGCTACTGGCTGCTGCGGCCGCGGGCGCCGCCGGGGCTGCCGCCGGGCCCCGCGCCCTGGCCGCTGGTGGGCAACTTCGCCTTCGCCCTGCTGCCGCTGCCGCTGCTGCGGAGGTGGGTGCTGGAGGTGTGGGGACGCGGTCGCGGCTCCCCCGTCTTCTCCCCCCACGTCTTCCTCACCGGCCTCACCAAGATGTACGGCAGCATCTTCCGGCTCTTTGTAGGCAGCCGGCCCTTCATCGTCCTCAACACCTTCGGGGCGGTGCGAGAGGCGCTGGTGCAGAAGGCGGAGGTGTTCAGCGACCGCCCCTCCGTCCCCATCGTCCTCATGATCACCCACAAGAAGG
Seq A exon
GTGTTATTTTTGCACCTTATGGCCCTGTGTGGAAGCAGCAGAGAAAATTCTCTCTCGCAACACTGCGGCATTTTGGAGTAGGAAGACACAGCTTAGAGCCCAAAATCATCGAGGAGCTGAAGTTCATAAAGAAAGAAATGCTGAAGCATGGAAAGGATTCATTTAGTCCCTTTCCAATTATTCGCAATGCGGTGTCTAATGTTATCTGCTCCATGGCCTTTGGCAGGCGTTTCAACTATGAAGATGTTGAGTTCAAGACGATGCTGAAGAACATGGCCCGTGCACTGGAGCTGAGCGTGAACAGCTCCATGATCCTGGTCAACATCTGCCCGTGGCTGTACTACCTTCCTTTCGGGCCTTTCAGGGAGCTTAGAAAAACAGAGTTAGATATTACGGCTTTTCTAAAGAAAATAATTGCACAGCACAGGGATACACTGGATGCAGCAAATCCCAGGGACTTCATTGATATGTACTTCCTCCATGCAGAAGAAGAGAAGAACAACAAGGAGAGCAGTTTTAATGAAGACTACCTATTTTTTATCATTGGAGATCTATTCATTGCAGGCACAGACACTACTTCCAACACGATATTGTGGTGCCTGCTCTACATGTCTCTCTACCCAGAAGTACAAG
Seq C2 exon
AGAAAGTTCATGCAGAAATTGAAGCAGTTCTAGGACGTGACAAAGTTCCCTCTCTTGCCCACAAGGCTCAAATGCCCTTCACGGAGGCAACCATTATGGAAGTGCAGAGGATGACTGCAGTTGTTCCCCTTTCTATCCCACGAATGGCTTCAGAAACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027908_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(17.9=60.3)
A:
PF0006717=p450=FE(46.0=100)
C2:
PF0006717=p450=PD(15.3=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGGTGTGGGGAC
R:
GGGGAACAACTGCAGTCATCC
Band lengths:
357-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]