RnoEX0025939 @ rn6
Exon Skipping
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236420604-236431596:-
Coord C1 exon
chr2:236431073-236431596
Coord A exon
chr2:236425993-236426628
Coord C2 exon
chr2:236420604-236420765
Length
636 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCTCTGTCTCTACAGGAA
3' ss Score
13.29
5' ss Seq
AAAGTAATC
5' ss Score
0.63
Exon sequences
Seq C1 exon
GGTGCTGCCGGCGCATCTGCGGCGGAGCTAGAGTCTGGCGGCCACATAGAGCATGTCCTCGATCGGGGGCCTGCGTCCCGCGGCCGGGGAGCAGCCGGGAGTTGGGCCGCACCTACAGGCGGTGGGAGGCGCGCTGCTGCTTTGCGGGCTGGCGGTCCTGCTGGACTGGGTTTGGCTGCAGCGGCAGCGCGCCGGCGGCATCCCTCCGGGGCCCAAGCCTCGGCCACTCGTGGGTAACTTCGGGTACTTGCTGCTGCCGCGCTTCCTACGGCTGCACTTCTGGCTGGGCTCGGGCAGCCAGACCGACACAGTAGGCCGGCATGTGTACCTGGCCAGGCTGGCCCGTGTCTATGGCAACATCTTCAGCTTCTTCATCGGCCACCGTCTGGTGGTGGTCCTCAGCGACTTCCAGAGCGTGCGCGAGGCGCTTGTGCAGCAGGCCGAAGTGTTCAGTGACCGCCCGCGGATGCCGCTCATCTCCATCTTGACCAAGGAGAAGG
Seq A exon
GAATCGTGTTCGCACACTATGGTCCGATCTGGAAGCAGCAGAGAAGATTCTCCCACTCAACCCTTCGTCACTTCGGCCTGGGCAAGCTTAGCCTGGAGCCCAGGATCATCGAGGAGTTCGCGTACGTGAAAGCAGAGATGCAGAAGCACGGGGAGGCCCCCTTCAGCCCCTTCCCAGTCATCAGCAATGCCGTCTCCAACATCATCTGCTCCCTGTGCTTCGGCCAGCGCTTCGACTACACCAACAAGGAGTTTAAAAAGGTGCTGGACTTCATGTCTCGAGGGCTAGAAATCTGCTTGCACAGCCAGCTCTTCCTGATCAACCTATGTCCCTGGTTTTACTACCTTCCCTTTGGGCCGTTTAAGGAACTGAGGCAAATCGAAAGGGACATAACCTGCTTCCTTAAAAACATCATCAAAGAGCACCAAGAGTCTCTGGATGCCAACAACCCCCAGGACTTCATAGACATGTACCTTCTGCACACGCAGGAGGAGAAGGACAAGTGCAAGGGCACCAACTTCGATGAGGACTACCTGTTCTACATCATCGGGGACCTCTTCATCGCGGGCACGGACACCACAACCAACTCTTTGCTCTGGTGCCTGCTGTACATGTCACTGAACCCCGGCGTGCAAA
Seq C2 exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCCGTGACCGTGCACCTTCCCTCACAGACAAGGCCCAGATGCCATACACAGAAGCCACCATCATGGAGGTACAGCGGTTATCCATGGTGGTACCACTTGCCATTCCTCACATGACCTCGGAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(17.6=54.0)
A:
PF0006717=p450=FE(46.2=100)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTACGGCTGCACTTCTG
R:
CGCTGTACCTCCATGATGGTG
Band lengths:
348-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]