MmuEX1007912 @ mm10
Exon Skipping
Gene
ENSMUSG00000027983 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1918769]
Coordinates
chr3:131295388-131303224:-
Coord C1 exon
chr3:131302680-131303224
Coord A exon
chr3:131297786-131298421
Coord C2 exon
chr3:131295388-131295549
Length
636 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCTGTCCTTGCAGGAA
3' ss Score
13.87
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
TCGCGGTGCCGGCGCGTCTGCAGCGGAGCTAGATGCAGGCGGTACCTGGGACATGTCCTCGCTCGGGGACCAGCGTCCCGCGGCAGGGGAGCAGCCGGGAGCTAGACTGCACGTGCGGGCGACAGGAGGCGCGCTGCTACTTTGCCTGCTGGCGGTGCTGCTAGGCTGGGTTTGGCTGCGGCGGCAACGCGCCTGCGGCATCCCTCCGGGGCCCAAGCCTCGGCCACTCGTGGGTAACTTCGGGCACTTGCTGGTGCCGCGCTTTCTACGACCGCAGTTCTGGCTGGGCTCGGGCAGCCAGACGGACACGGTGGGCCAGCATGTGTACCTGGCCAGGATGGCCCGTGTCTATGGCAACATCTTCAGCTTCTTCATCGGCCACCGTCTGGTGGTGGTCCTCAGCGACTTCCACAGCGTGCGCGAGGCGCTAGTGCAGCAGGCTGAAGTGTTCAGTGACCGCCCGCGGATGCCGCTCATCTCCATCATGACCAAGGAGAAGG
Seq A exon
GAATCGTGTTTGCACACTATGGTCCAATTTGGAAACAGCAGAGGAGATTCTCCCACTCGACGCTTCGTCATTTCGGTCTGGGCAAGCTCAGCCTGGAGCCCAGGATCATCGAGGAGTTTGCATACGTGAAAGAAGCCATGCAGAAGCACGGGGAGGCCCCCTTCAGCCCCTTCCCAATCATCAGCAATGCCGTCTCCAACATCATCTGCTCCCTGTGCTTCGGCCAGCGCTTCGATTACACCAACAAGGAGTTTAAAAAGGTGTTGGATTTCATGTCCCGGGGGTTGGAAATCTGCCTGCACAGCCAGCTCTTCCTGATCAACATATGCCCCTGGTTTTACTACCTCCCCTTTGGTCCATTTAAGGAGCTAAGGCAAATCGAAAGGGACATATCCTGCTTCCTGAAAAACATCATCCGAGAGCATCAAGAGTCTCTGGATGCCAGCAACCCTCAGGACTTCATAGACATGTACCTTCTGCACATGGAGGAAGAGCAGGGAGCCAGCAGGCGCAGCAGCTTCGACGAGGACTACCTGTTCTACATCATTGGGGACCTCTTCATCGCCGGCACTGACACCACGACCAACTCTCTGCTCTGGTGCCTGCTGTACATGTCACTGAACCCCGACGTGCAAA
Seq C2 exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCTGTGACCGTGCACCTTCCCTCACGGACAAGGCCCAGATGCCATACACAGAGGCCACCATCATGGAGGTGCAGCGGCTGTCCATGGTGGTGCCGCTCGCCATTCCTCACATGACCTCGGAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027983-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(17.6=54.0)
A:
PF0006717=p450=FE(46.2=100)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTAACTTCGGGCACTTG
R:
CTCTGTGTATGGCATCTGGGC
Band lengths:
357-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types