GgaEX1019114 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6602016-6632587:-
Coord C1 exon
chr17:6632523-6632587
Coord A exon
chr17:6631691-6631735
Coord C2 exon
chr17:6602016-6602196
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCAGTCTTCTCTGTTTGCAGCGA
3' ss Score
8.38
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTAAAACTCTTGCCTATGGAATTCCACTTGTACAGTCCTTGCAAGGAATGCAATCCAAAATACAG
Seq A exon
CGAAGTGACGGGCCTTATGCACTGGTGTTAGTCCCAACAAGAGAG
Seq C2 exon
CACTGCAGTCTTTTCTTTGTGCCTACACCGCCTATCCCAGAAGCCTCAAGCACATCTTCCACATCAAATCTATCCACCTGGGTCATGTGGCCAAGAGCTTTGGCCTGAGAGATGCTCCCCAGAACCTGACTACTCTTCCAACTGCTAACTCAAAGAAGAAAACCAAACCAAGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-2/15=1-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.369
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(11.7=100)
A:
PF0027024=DEAD=FE(8.9=100)
C2:
PF139591=DUF4217=PD(64.6=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTTGTACAGTCCTTGCA
R:
AAAGCTCTTGGCCACATGACC
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]