MmuEX0014087 @ mm10
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28848286-28860892:+
Coord C1 exon
chr2:28848286-28848350
Coord A exon
chr2:28854771-28854815
Coord C2 exon
chr2:28860716-28860892
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTCTGTCAACAGCGC
3' ss Score
9.94
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTAAAACTCTTGCCTATTGCGTCCCTGTGGTCCAGTCTCTTCAAGCACTGACATCAAAAATACAG
Seq A exon
CGCAGTGATGGACCGTATGCTTTGGTCCTAGTGCCCACCAGAGAG
Seq C2 exon
TTTGAGAAGAACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAATTGGTGGAGTTCCACTACAGCCTCTTCCTTCACACCCTGCTTTGCCACTCAGGGACCCCTACTTCAGAGCATCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX3-1/9=C1-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(11.8=100)
A:
PF0027024=DEAD=FE(7.9=100)
C2:
PF0027126=Helicase_C=PU(20.3=25.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGTCCAGTCTCTTCA
R:
GCAAAGCAGGGTGTGAAGGAA
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types