MmuEX0014093 @ mm10
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28858988-28860892:+
Coord C1 exon
chr2:28858988-28859094
Coord A exon
chr2:28859869-28860077
Coord C2 exon
chr2:28860716-28860892
Length
209 bp
Sequences
Splice sites
3' ss Seq
TACTTCTCATTGTATCTAAGGTG
3' ss Score
5.51
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATCTTGGATTTGGGTTTTGAGAAGGACATCACAGTGATTCTGAATGCTGTCAATGCTGAGTGTCAGAAACGGCAGAATGTCCTCCTGTCAGCGACACTCACAGAAG
Seq A exon
GTGTAACACGGCTAGTTGATATCAGTTTGCACAATCCAGTCAGTATCTCTGTCCTGGACAAAAACTGCAACCAGCCCAATCCTAAGGAAGTTGCTAGTATCCAGCTCAACAGCTTTGCCATACCAGAGAGTCTCGACCAGCATGTGGTGTTGGTTCCCAGCAAGCTACGTCTTGTCTGCCTTGCAGCCTTCATCCTGCAAAAGTGCAAG
Seq C2 exon
TTTGAGAAGAACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAATTGGTGGAGTTCCACTACAGCCTCTTCCTTCACACCCTGCTTTGCCACTCAGGGACCCCTACTTCAGAGCATCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-'17-20,'17-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.7)
C2:
PF0027126=Helicase_C=PU(20.3=25.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGGATTTGGGTTTTGAGAAGG
R:
CTCCTGTTCCATGTTGCCATG
Band lengths:
284-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types