RnoEX6016180 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7442023-7443946:+
Coord C1 exon
chr3:7442023-7442129
Coord A exon
chr3:7442914-7443122
Coord C2 exon
chr3:7443770-7443946
Length
209 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCATTGTATCTAAGGTG
3' ss Score
7.18
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATCTTGGATTTGGGCTTTGAGAAGGATGTCACCGTGATTCTGAATGCTGTAAATGCTGAGTGTCAGAAGCGGCAGAATGTCCTCCTGTCAGCGACACTCACGGAAG
Seq A exon
GTGTAACTCGGCTGGCTGATATCAGTTTGCACAATCCAGTCAGTATCTCTGTCCTGGACAAAAGTTGGGACCAGCCCAATCCTAAGGAAGTTGCTAGTATCCAGCTGGACAGCTTTGCCATACCAGAGAGTCTCGACCAGTATGTGGTGTTGGTTCCCAGCAAGCTGCGCCTTGTCTGCCTTGCAGCCTTCATCCTGAAGAAGTGCAAG
Seq C2 exon
TTTGAGAAGGACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAGCTGGTAGAGTTCCACTACAACCTCTTCCTTCACACCCTGCTTTGCCACTCCGGGACCCCTGCTTCAGAGACGCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGAAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040-'13-19,'13-18,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.7)
C2:
PF0027126=Helicase_C=PU(20.3=25.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGGATTTGGGCTTTGAGA
R:
CTCCTGCTTCATGTTGCCATGC
Band lengths:
284-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]