DreEX0026225 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29118643-29120834:+
Coord C1 exon
chr5:29118643-29118749
Coord A exon
chr5:29119066-29119280
Coord C2 exon
chr5:29120670-29120834
Length
215 bp
Sequences
Splice sites
3' ss Seq
CGTGTTCTCTGCACTTGCAGGAC
3' ss Score
10.71
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GATTTTGGATTTGGGCTTTGAGAAAGATCTGACTGTGATTCTGAATGCACTGAACGCCGCTGGACCCGACAGGCAAAATGTGCTGCTTTCAGCTACTATAACTGAAG
Seq A exon
GACTGTCCCGATTAGCCAGTATCAGTATGAAGGATCCTGTGAGTGTCCATGTGTCAGAGGGGAGTGAGGAGACAGTTGAAGCGTGTCCCCAGGCGGCCCCTCAGGCTCTGTCAGACAGCTACGCAGTGCCTGAGAGACTACAGCAGCACGTGGTGGTGGTGCCCAGCAAGCTCCACCTGGTCTGTTTGGCTGCCTTTATTCTGGCCAAATGCAAG
Seq C2 exon
TTTGAGCAGCGTCAGAAGTTGATCATCTTCATATCCAGCTGTGAAGCTGTAGAGTTTCTGCTCAATCTCTTTACTGCAGTCCTCTGTGAAATTCCCAGCAACACCTCATCTAAAAGTACCTCATGCCTCAACTTCTACAGACTGCATGGCAACATGAGACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.6)
C2:
PF0027126=Helicase_C=PU(22.4=30.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGATTTGGGCTTTGAGAAAGA
R:
TCCTGTCTCATGTTGCCATGC
Band lengths:
268-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]