MmuEX0014093 @ mm9
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28703806-28716412:+
Coord C1 exon
chr2:28703806-28703870
Coord A exon
chr2:28715389-28715597
Coord C2 exon
chr2:28716236-28716412
Length
209 bp
Sequences
Splice sites
3' ss Seq
TACTTCTCATTGTATCTAAGGTG
3' ss Score
5.51
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTAAAACTCTTGCCTATTGCGTCCCTGTGGTCCAGTCTCTTCAAGCACTGACATCAAAAATACAG
Seq A exon
GTGTAACACGGCTAGTTGATATCAGTTTGCACAATCCAGTCAGTATCTCTGTCCTGGACAAAAACTGCAACCAGCCCAATCCTAAGGAAGTTGCTAGTATCCAGCTCAACAGCTTTGCCATACCAGAGAGTCTCGACCAGCATGTGGTGTTGGTTCCCAGCAAGCTACGTCTTGTCTGCCTTGCAGCCTTCATCCTGCAAAAGTGCAAG
Seq C2 exon
TTTGAGAAGAACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAATTGGTGGAGTTCCACTACAGCCTCTTCCTTCACACCCTGCTTTGCCACTCAGGGACCCCTACTTCAGAGCATCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX3-7/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(11.8=100)
A:
PF0027024=DEAD=PD(2.2=5.7)
C2:
PF0027126=Helicase_C=PU(20.3=25.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTGCCTATTGCGTCCC
R:
TCCTGTTCCATGTTGCCATGC
Band lengths:
237-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: