HsaEX6063665 @ hg38
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132645895-132648295:-
Coord C1 exon
chr9:132648189-132648295
Coord A exon
chr9:132646823-132647058
Coord C2 exon
chr9:132645895-132646071
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTACTTTTATCCAAGGTG
3' ss Score
6.78
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AATCTTGGATTTGGGTTTTGAAAAGGACATCACAGTGATACTTAATGCTGTAAATGCTGAATGCCAAAAACGACAGAATGTCTTGCTATCAGCGACACTCACAGAAG
Seq A exon
GTGTAACGCGGCTAGCTGATATCAGTTTGCATGATCCAGTCAGTATTTCTGTCCTGGACAAGAGCCATGACCAGTTGAACCCAAAGGACAAAGCGGTCCAGGAGGTCTGTCCTCCACCAGCTGGCGACAAGCTGGACAGCTTTGCAATACCAGAGAGTCTCAAGCAGCATGTGACTGTGGTTCCCAGCAAACTGAGGCTTGTCTGCCTAGCGGCCTTCATCCTTCAGAAATGCAAG
Seq C2 exon
TTTGAGGAAGACCAGAAGATGGTTGTCTTTTTCTCAAGTTGCGAGCTGGTGGAGTTCCACTACAGCCTCTTCCTACAGACCCTGCTGAGCAGCTCAGGGGCGCCGGCATCAGGGCAGTTGCCATCTGCCTCCATGCGATTAAAATTCCTACGGCTGCATGGCGGCATGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-'22-18,'22-17,24-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.1)
C2:
PF0027126=Helicase_C=PU(43.2=27.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGGGTTTTGAAAAGGACA
R:
CTGCTCCATGCCGCCATG
Band lengths:
276-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains