GgaEX1019118 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6602016-6627894:-
Coord C1 exon
chr17:6627788-6627894
Coord A exon
chr17:6626918-6627153
Coord C2 exon
chr17:6602016-6602196
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCCTGTGGTTTAGGAG
3' ss Score
8.01
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCCTAGACCTGGGCTTTGAGAAGGATGTAACTGTGATACTTAATGCTTTAAATGCTGAGAGGGAGACGCGTCAGAATGTTTTGCTCTCAGCCACACTCACTGAAG
Seq A exon
GAGTAACACGGCTGGCTGATATCAGTTTGAATGATCCCATCAGAATTTCCATAGCAGATGAAATCCGGGAGAGTCTCAAACCAGCATTACAAACAGAAAAAGAAGCCAATAGTTCCTCAAACCGTATGGACCAGGAAAACTTTGCTGTTCCAGAGAAGCTTAAGCAGTATTTCATGATGGTCCCCAGCAAATTGAGGCTTGTCACATTAGCAGCTTTTGTCCTAGAGAAATGCAAG
Seq C2 exon
CACTGCAGTCTTTTCTTTGTGCCTACACCGCCTATCCCAGAAGCCTCAAGCACATCTTCCACATCAAATCTATCCACCTGGGTCATGTGGCCAAGAGCTTTGGCCTGAGAGATGCTCCCCAGAACCTGACTACTCTTCCAACTGCTAACTCAAAGAAGAAAACCAAACCAAGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-7/15=6-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.215 C2=0.369
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.1=100)
A:
PF0027024=DEAD=PD(2.2=5.1)
C2:
PF139591=DUF4217=PD(64.6=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGACCTGGGCTTTGAGA
R:
TTTTGCTCTTGGTTTGGTTTTCT
Band lengths:
284-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]